Only move empty frames back down to the lower Box, leave the capped frames up top until emerged
If there is no upper entrance, you will end up with an unmated virgin which could cause problems when you take down the Demarree - you will also end up with brood frames full of drone brood - something you definitely don't want.
An upper entrance avoids lot of problems and could leave you with a bonus colony - I've yet to see there being a problem running with two queens. Also, as you don't get many QC's at the best of times, the chances of them throwing a swarm out are slim.
Here's an example of a simple Demarree board for the top box
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