I always top super,makes no difference to honey yield,less pollen in supers and much quicker when dealing with of hives,plus easy to see how full without moving all supers that are above first,simply remove roof and crown board.
From a previous post on this subject,plus link to reasearch.
ADDING SUPERS FOR EXTRACTED HONEY.
The actual operation is about the simplest in beekeeping: with the super ready on a stand beside the hive, remove the crown-board and put it over the supers; smoke once, put on the excluder, and lift the supers on top of it. Total time, about twenty seconds. If you are using a plain zinc excluder, you will have to scrape the tops of the brood-frames to allow it to lie flat—a job best done by firm smoking and one determined stroke per frame, rather than by many delicate strokes.
Estimating the right time and order for adding supers is more difficult; the advice used to be to super when the first crumbs of fresh white wax began to appear at the tops of the brood frames, but this is now reckoned as too late. Probably the stock is really only ready for supers when, on removing the cover-board (with only a whiff of smoke), you find bees at the top of the six middle frames.
The first super must, if possible , be of drawn combs and not foundation. Bees cannot draw out foundation until warm weather and plentiful nectar arrive, and if you insist on their doing so, will often swarm with ample room at their disposal – “room” which they cannot use.
It is now considered that the second, third and fourth supers may be added on top of the first and allowed to remain there. It is true that a super of foundation will be fully drawn faster if one puts it below the first super as soon as the bees have half-occupied it, but honey farmers say this is done at the expense of work in No.1 super, and that the overall work in a bock of supers is no better by this means than by “top supering”.
Snags:
Adding a cuper to early: the result is to drive the bees down from it, because of the loss of heat.
Putting a second super of foundation under the No.1 super without letting the bees start work on it in the upper position: this disheartens the bees and may cause swarming in the same way as giving foundation only in the No.1 super.
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Radcliff omits reference to pollen in supers which is a valid point that hivemaker makes. He also omits the benefit of top supering enabling quick checks with large numbers of supers (Hivemaker). I've got stocks on 7 supers that are quite happily in the top box drawing foundation.
The point about faster drawing when bottom supering (PolyHive) is mentioned but the caveat is that work in supers above is retarded as work commences in the new supers below and the risk is partially filled supers and consequent wasted space, especially when foundation is being drawn.
http://www.ent.uga.edu/bees/Publications/EffectsTopVsBottom.pdf
http://www.beekeepingforum.co.uk/showthread.php?p=66454#post66454